4C RESULTS

Dear W4CSEQ user, your submission (identifier: 854) was received at Mon May 30 20:41:05 2016 and processed at Mon May 30 20:41:13 2016.


4C RESULTS

Summary of parameters

ITEM VALUE
FASTQ_FILE1
FASTQ_FILE2
GENOME_BUILD mm10
BAIT_CHROMOSOME chr17
BAIT_START 35504676
BAIT_END 35504824
EXTEND 500
BIN_TRANS 2000000
BIN_CIS 400000
WINDOW_CIS 12000000
FDR 0.05

Summary of 4C metric

ITEM COUNT
Sequenced read pairs 12351814
Sequenced read pairs with good base quality (>=20 for both reads) 12344989
Interaction reads after removing randomly aligned reads 175552
Distal interacting sites 4344
    Distal interacting sites (cis) 162
    Distal interacting sites (trans) 4182
Significant interacting sites 201
    Significant interacting sites (cis) 6
    Significant interacting sites (trans) 195
Significant interacting regions 15
    Significant interacting regions (cis) 1
    Significant interacting regions (trans) 14

Figures

500x500

Genome-wide distribution of 4C regions



500x500

Genome-wide interaction circos map



500x500

Distance distribution to key features



500x500

DNA replication timing of 4C regions



View in UCSC genome browser

view raw reads pile-up in UCSC genome browser
view captured sites summed in smoothing window in UCSC genome browser






Please send questions or comments to caim@usc.edu